MirGeneDB 2.1
MirGeneDB ID

Rno-Mir-489

Family name MIR-489 (all species)
Seed UGACAUC
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Aca-Mir-489-v2  Ami-Mir-489-v1  Ami-Mir-489-v2  Bta-Mir-489-v1  Bta-Mir-489-v2  Bta-Mir-489-v3  Cfa-Mir-489  Cli-Mir-489-v1  Cli-Mir-489-v2  Cpi-Mir-489-v1  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v1  Dre-Mir-489-v2  Gga-Mir-489-v1  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v1  Gmo-Mir-489-v2  Hsa-Mir-489-v1  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v1  Loc-Mir-489-v2  Mal-Mir-489-v1  Mal-Mir-489-v2  Mml-Mir-489-v1  Mml-Mir-489-v2  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tgu-Mir-489-v2  Tni-Mir-489-v1  Tni-Mir-489-v2  Xla-Mir-489-P1-v1  Xla-Mir-489-P1-v2  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2  Xtr-Mir-489-v1  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(rn6)		 chr4: 28659547-28659606 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)		 Mir-653 chr4: 28658901-28658959 [-] UCSC Ensembl
Mir-489 chr4: 28659547-28659606 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUGCUGACUGCUACAGUGGCAGCUUGGUUGUCGUAUGCGUGAUGACACGUUCUCGUGUAUUCCAGAAUGACAUCACAUAUAUGGCAGCUAAACUGUUACAGGAACAACAAGUAAUAUU
Get precursor sequence
Structure
        10          20        30        40        50         
AUCUGCUGACUGCUACA--|      C              C      A  CGUUCUCGU 
                   GUGGCAG UUGGUUGUCGUAUG GUGAUG CA         G
                   CAUUGUC AAUCGACGGUAUAU CACUAC GU         U
UUAUAAUGAACAACAAGGA^      A              A      A  AAGACCUUA 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Star sequence

Rno-Mir-489_5p*
mirBase accessionMIMAT0017196
Sequence 
0- UGUCGUAUGCGUGAUGACACGU -22
Get sequence
Proposed targets TargetScanVert: rno-miR-489-5p
miRDB: MIMAT0017196
Mature sequence

Rno-Mir-489_3p
mirBase accessionMIMAT0003113
Sequence 
38- AUGACAUCACAUAUAUGGCAGC -60
Get sequence
Proposed targets microrna.org: MIMAT0003113
TargetScanVert: rno-miR-489-3p
miRDB: MIMAT0003113