MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-489

Family name MIR-489 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(Gallus_gallus.GRCg6a)		 2: 23119351-23119410 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v1)		 Mir-489-v2 2: 23119350-23119411 [-] UCSC Ensembl
Mir-489-v1 2: 23119351-23119410 [-] UCSC Ensembl
Variant

Gga-Mir-489-v1
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
UAACAGUCAUUUGUCACGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCAUUUAAACA
Get precursor sequence
Structure
        10          20        30        40        50         
UAACAGUCAUUUGUCAC--|UG UG C    UG             C       ACUUGG 
                   G  G  G UUGG  GUCGUAUGUAUGA GUCAUUU      A
                   C  C  C AAUC  CGGCAUGUAUACU CAGUGAG      C
ACAAAUUUACUACAGGGUA^GU GU A    GU             A       GAUUUU 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-489-v1_5p*
mirBase accessionMIMAT0026632
Sequence 
0- GGUCGUAUGUAUGACGUCAUUU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-489-5p
miRDB: MIMAT0026632
Mature sequence

Gga-Mir-489-v1_3p
mirBase accessionMIMAT0003365
Sequence 
38- GUGACAUCAUAUGUACGGCUGC -60
Get sequence
Proposed targets TargetScanVert: gga-miR-489-3p
miRDB: MIMAT0003365
Variant

Gga-Mir-489-v2
Seed GACAUCA
Precursor
(pre-Mir +30nt flank)		 
AUAACAGUCAUUUGUCACGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCAUUUAAACAU
Get precursor sequence
Structure
        10          20        30        40        50        60
AUAACAGUCAUUUGUCAC--|UG UG C    UG             C      UACUUGG 
                    G  G  G UUGG  GUCGUAUGUAUGA GUCAUU       A
                    C  C  C AAUC  CGGCAUGUAUACU CAGUGA       C
UACAAAUUUACUACAGGGUA^GU GU A    GU             A      GGAUUUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Star sequence

Gga-Mir-489-v2_5p*
mirBase accessionMIMAT0026632
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
Get sequence
Proposed targets TargetScanVert: gga-miR-489-5p
miRDB: MIMAT0026632
Mature sequence

Gga-Mir-489-v2_3p
mirBase accessionMIMAT0003365
Sequence 
40- UGACAUCAUAUGUACGGCUGCU -62
Get sequence
Proposed targets TargetScanVert: gga-miR-489-3p
miRDB: MIMAT0003365