MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-489

Family name MIR-489 (all species)
Seed UGACAUC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Aca-Mir-489-v2  Ami-Mir-489-v1  Ami-Mir-489-v2  Bta-Mir-489-v1  Bta-Mir-489-v2  Bta-Mir-489-v3  Cli-Mir-489-v1  Cli-Mir-489-v2  Cpi-Mir-489-v1  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v1  Dre-Mir-489-v2  Gga-Mir-489-v1  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v1  Gmo-Mir-489-v2  Hsa-Mir-489-v1  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v1  Loc-Mir-489-v2  Mal-Mir-489-v1  Mal-Mir-489-v2  Mml-Mir-489-v1  Mml-Mir-489-v2  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tgu-Mir-489-v2  Tni-Mir-489-v1  Tni-Mir-489-v2  Xla-Mir-489-P1-v1  Xla-Mir-489-P1-v2  Xla-Mir-489-P2-v1  Xla-Mir-489-P2-v2  Xtr-Mir-489-v1  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(canFam3_add)
chr14: 18980191-18980250 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)
Mir-653 chr14: 18979485-18979543 [-] UCSC Ensembl
Mir-489 chr14: 18980191-18980250 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGUACUUCAGGUAUUGGUGGCAGCUUGGUGGCCGUAUGUGUGGCGCCAUUUACUUGAACCUUUAGGAGUGACAUCACAUAUACGGCGGCUAAACUGCUACAUAGGACAACAAUUAAGAG
Get precursor sequence
Structure
        10          20        30        40        50         
GAGUACUUCAGGUAUUG--|      C     G             CGC     ACUUGA 
                   GUGGCAG UUGGU GCCGUAUGUGUGG   CAUUU      A
                   CAUCGUC AAUCG CGGCAUAUACACU   GUGAG      C
GAGAAUUAACAACAGGAUA^      A     G             ACA     GAUUUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-489_5p* (predicted)

mirBase accessionNone
Sequence
0- GGCCGUAUGUGUGGCGCCAUUU -22
Get sequence
Mature sequence

Cfa-Mir-489_3p

mirBase accessionMIMAT0009860
Sequence
38- GUGACAUCACAUAUACGGCGGC -60
Get sequence
Proposed targets TargetScanVert: cfa-miR-489
miRDB: MIMAT0009860