MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-489

Family name MIR-489 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xla-Mir-489-P1-v1  Xla-Mir-489-P2-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021922.1: 53363703-53363762 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)		 Mir-489 CM021922.1: 53363703-53363762 [+] UCSC Ensembl
Mir-653 CM021922.1: 53364797-53364853 [+] UCSC Ensembl
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
GCUGACUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUUUACUUGAUCCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGCUACAUGGGACAACAAUUAUGAG
Get precursor sequence
Structure
        10          20        30        40        50         
GCUGACUACUGCUGUUG--|      C     G             CGC     ACUUGA 
                   GUGGCAG UUGGU GUCGUAUGUGUGG   CAUUU      U
                   CAUCGUC AAUCG CGGCAUAUACACU   GUGAG      C
GAGUAUUAACAACAGGGUA^      A     A             ACA     GAUUUC 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Cja-Mir-489_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGUAUGUGUGGCGCCAUUU -22
Get sequence
Mature sequence

Cja-Mir-489_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGACAUCACAUAUACGGCAGC -60
Get sequence