MirGeneDB ID | Loc-Mir-489-v1 |
Family name |
MIR-489 (all species) |
Seed |
UGACAUC |
Species |
Spotted gar (Lepisosteus oculatus) |
MiRBase ID |
|
Paralogues |
Loc-Mir-489-v2
|
Orthologues |
Aca-Mir-489-v1
Ami-Mir-489-v1
Bta-Mir-489-v1
Cfa-Mir-489
Cli-Mir-489-v1
Cpi-Mir-489-v1
Dno-Mir-489
Dre-Mir-489-v1
Gga-Mir-489-v1
Gja-Mir-489
Gmo-Mir-489-v1
Hsa-Mir-489-v1
Lch-Mir-489
Mal-Mir-489-v1
Mml-Mir-489-v1
Mmu-Mir-489
Mun-Mir-489
Ocu-Mir-489
Pbv-Mir-489
Rno-Mir-489
Sha-Mir-489
Spt-Mir-489
Tgu-Mir-489-v1
Tni-Mir-489-v1
Xtr-Mir-489-v1
|
Node of Origin (locus) |
Osteichthyes
|
Node of Origin (family) |
Osteichthyes
|
Genome context (LepOcu1) |
LG11: 37047670-37047728 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGUGUAGGCUGAUAUGCGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUCAAUGUUUGGAGUGACAUCAUAUGUACGGCUGCUAAACUUCUACAUGGGACAACAGUACUCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CGUGUAGGCUGAUAUGC--| U C UG C ACUUCA
GUGG GG UUGG GUCGUAUGUAUGA GUCAUUU \
CAUC UC AAUC CGGCAUGUAUACU CAGUGAG A
UUCUCAUGACAACAGGGUA^ U A GU A GUUUGU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Br |
Br |
He |
He |
He |
He |
Ov |
Ov |
Ov |
Ov |
Te |
Te |
Te |
Te |
To |
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Star sequence |
Loc-Mir-489-v1_5p* |
mirBase accession | None |
Sequence |
0- GGUCGUAUGUAUGACGUCAUUU -22
Get sequence
|
Mature sequence |
Loc-Mir-489-v1_3p |
mirBase accession | None |
Sequence |
37- GUGACAUCAUAUGUACGGCUGC -59
Get sequence
|