| MirGeneDB ID | Lch-Mir-489 |
|---|---|
| Family name | MIR-489 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-489-v1 Ami-Mir-489-v1 Bta-Mir-489-v1 Cfa-Mir-489 Cja-Mir-489 Cli-Mir-489-v1 Cpi-Mir-489-v1 Dno-Mir-489 Dre-Mir-489-v1 Eca-Mir-489 Gga-Mir-489-v1 Gja-Mir-489 Gmo-Mir-489-v1 Hsa-Mir-489-v1 Laf-Mir-489 Loc-Mir-489-v1 Mal-Mir-489-v1 Mml-Mir-489-v1 Mmr-Mir-489 Mmu-Mir-489 Mun-Mir-489 Ocu-Mir-489 Pab-Mir-489 Pbv-Mir-489 Rno-Mir-489 Sha-Mir-489 Spt-Mir-489 Tgu-Mir-489-v1 Tni-Mir-489-v1 Xla-Mir-489-P1-v1 Xla-Mir-489-P2-v1 Xtr-Mir-489-v1 |
| Node of Origin (locus) | Osteichthyes |
| Node of Origin (family) | Osteichthyes |
| Genome context (LatCha1_add) |
JH128944.1: 60346-60405 [-] Ensembl |
| Seed | UGACAUC |
| Precursor (pre-Mir +30nt flank) |
CAUAUGAAGUAACAUGCGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUACAUGUGACGUCAUCUGUGUCGet precursor sequence |
| Structure | 10 20 30 40 50 CAUAUGAAGUAACAUGC--| UG C UG C ACUUGG GUGG G UUGG GUCGUAUGUAUGA GUCAUUU A CAUC C AAUC CGGCAUGUAUACU CAGUGAG C CUGUGUCUACUGCAGUGUA^ GU A GU A GAUUUU . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Lch-Mir-489_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGUCGUAUGUAUGACGUCAUUU -22
Get sequence
|
| Mature sequence | Lch-Mir-489_3p (predicted) |
| mirBase accession | None |
| Sequence |
38- GUGACAUCAUAUGUACGGCUGC -60
Get sequence
|
