MirGeneDB 3.0
MirGeneDB ID

Hsa-Mir-489

Family name MIR-489 (all species)
Species Human (Homo sapiens)
MiRBase ID hsa-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(hg38)		 chr7: 93483947-93484006 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v1)		 Mir-653 chr7: 93482784-93482840 [-] UCSC Ensembl
Mir-489-v2 chr7: 93483946-93484007 [-] UCSC Ensembl
Mir-489-v1 chr7: 93483947-93484006 [-] UCSC Ensembl
Variant

Hsa-Mir-489-v1
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
GCUGACUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGACGCCAUUUACUUGAACCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGCUACAUGGGACAACAAUUAAGAG
Get precursor sequence
Structure
        10          20        30        40        50         
GCUGACUACUGCUGUUG--|      C     G             CGC     ACUUGA 
                   GUGGCAG UUGGU GUCGUAUGUGUGA   CAUUU      A
                   CAUCGUC AAUCG CGGCAUAUACACU   GUGAG      C
GAGAAUUAACAACAGGGUA^      A     A             ACA     GAUUUC 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-489-v1_5p*
mirBase accessionMIMAT0026605
Sequence 
0- GGUCGUAUGUGUGACGCCAUUU -22
Get sequence
Proposed targets TargetScanVert: hsa-miR-489-5p
miRDB: MIMAT0026605
Mature sequence

Hsa-Mir-489-v1_3p
mirBase accessionMIMAT0002805
Sequence 
38- GUGACAUCACAUAUACGGCAGC -60
Get sequence
Proposed targets microrna.org: MIMAT0002805
TargetScanVert: hsa-miR-489-3p
miRDB: MIMAT0002805
Variant

Hsa-Mir-489-v2
Seed GACAUCA
Precursor
(pre-Mir +30nt flank)		 
UGCUGACUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGACGCCAUUUACUUGAACCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGCUACAUGGGACAACAAUUAAGAGU
Get precursor sequence
Structure
        10          20        30        40        50        60
UGCUGACUACUGCUGUUG--|      C     G             CGC    UACUUGA 
                    GUGGCAG UUGGU GUCGUAUGUGUGA   CAUU       A
                    CAUCGUC AAUCG CGGCAUAUACACU   GUGA       C
UGAGAAUUAACAACAGGGUA^      A     A             ACA    GGAUUUC 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Dc Dc Dr Dr Xp Xp Bl Br Br Ce Ce Co Fo He Ki Le Li Li Lu Pa Pl Pl Sk Sk Sk Sm Sp Sp St Te Th Ut
Star sequence

Hsa-Mir-489-v2_5p*
mirBase accessionMIMAT0026605
Sequence 
0- UGGUCGUAUGUGUGACGCCAUU -22
Get sequence
Proposed targets TargetScanVert: hsa-miR-489-5p
miRDB: MIMAT0026605
Mature sequence

Hsa-Mir-489-v2_3p
mirBase accessionMIMAT0002805
Sequence 
40- UGACAUCACAUAUACGGCAGCU -62
Get sequence
Proposed targets microrna.org: MIMAT0002805
TargetScanVert: hsa-miR-489-3p
miRDB: MIMAT0002805