MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-489

Family name MIR-489 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-489
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xla-Mir-489-P1-v1  Xla-Mir-489-P2-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009151.1: 37175527-37175587 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)		 Mir-653 CM009151.1: 37174812-37174870 [-] UCSC Ensembl
Mir-489 CM009151.1: 37175527-37175587 [-] UCSC Ensembl
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
GCGGACUACAGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUUUAUUUGACCCCUUUAGGAGUGACAUCACAUAUACGGCGGCUAAACUGCUACAUAAGACAACAAUUAAGCG
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Structure
        10          20        30        40        50          
GCGGACUACAGCUGUUG--|      C     G             CGC     AUUUGAC 
                   GUGGCAG UUGGU GUCGUAUGUGUGG   CAUUU       \
                   CAUCGUC AAUCG CGGCAUAUACACU   GUGAG       C
GCGAAUUAACAACAGAAUA^      A     G             ACA     GAUUUCC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-489_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGUAUGUGUGGCGCCAUUU -22
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Mature sequence

Eca-Mir-489_3p
mirBase accessionMIMAT0012943
Sequence 
39- GUGACAUCACAUAUACGGCGGC -61
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