Mir-489

MirGeneDB ID

Dno-Mir-489

Family name

MIR-489 (all species)

Seed

UGACAUC

Species

Nine-banded armadillo (Dasypus novemcinctus)

MiRBase ID

dno-mir-489

Paralogues

Orthologues

Aca-Mir-489-v1 Aca-Mir-489-v2 Ami-Mir-489-v1 Ami-Mir-489-v2 Bta-Mir-489-v1 Bta-Mir-489-v2 Bta-Mir-489-v3 Cfa-Mir-489 Cli-Mir-489-v1 Cli-Mir-489-v2 Cpi-Mir-489-v1 Cpi-Mir-489-v2 Dre-Mir-489-v1 Dre-Mir-489-v2 Gga-Mir-489-v1 Gga-Mir-489-v2 Gja-Mir-489 Gmo-Mir-489-v1 Gmo-Mir-489-v2 Hsa-Mir-489-v1 Hsa-Mir-489-v2 Lch-Mir-489 Loc-Mir-489-v1 Loc-Mir-489-v2 Mal-Mir-489-v1 Mal-Mir-489-v2 Mml-Mir-489-v1 Mml-Mir-489-v2 Mmu-Mir-489 Mun-Mir-489 Ocu-Mir-489 Pbv-Mir-489 Rno-Mir-489 Sha-Mir-489 Spt-Mir-489 Tgu-Mir-489-v1 Tgu-Mir-489-v2 Tni-Mir-489-v1 Tni-Mir-489-v2 Xla-Mir-489-P1-v1 Xla-Mir-489-P1-v2 Xla-Mir-489-P2-v1 Xla-Mir-489-P2-v2 Xtr-Mir-489-v1 Xtr-Mir-489-v2

Node of Origin (locus)

Osteichthyes

Node of Origin (family)

Osteichthyes

Genome context
(dasNov3)

JH574710: 687595-687653 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-489)

Mir-489 JH574710: 687595-687653 [+] UCSC Ensembl
Mir-653 JH574710: 688203-688265 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUAACUCCAGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGUGCCAUUUAUUUAACCUUUAGAAGUGACAUCACAUAUACGGUGGCUAAACUGCUACAUGGGACAACAAUGAAAAC

Get precursor sequence

Structure

        10          20        30        40        50         
GCUAACUCCAGCUGUUG--|      C     GG              C     AUUUAA 
                   GUGGCAG UUGGU  UCGUAUGUGUGGUG CAUUU      \
                   CAUCGUC AAUCG  GGCAUAUACACUAC GUGAA      C
CAAAAGUAACAACAGGGUA^      A     GU              A     GAUUUC 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Star sequence

Dno-Mir-489_5p*

mirBase accession

MIMAT0047920

Sequence

0- GGUCGUAUGUGUGGUGCCAUUU -22

Get sequence

Mature sequence

Dno-Mir-489_3p

mirBase accession

MIMAT0047921

Sequence

37- GUGACAUCACAUAUACGGUGGC -59

Get sequence