MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-489

Family name MIR-489 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-489-v1  Ami-Mir-489-v1  Bta-Mir-489-v1  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v1  Cpi-Mir-489-v1  Dno-Mir-489  Dre-Mir-489-v1  Eca-Mir-489  Gga-Mir-489-v1  Gja-Mir-489  Gmo-Mir-489-v1  Hsa-Mir-489-v1  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v1  Mal-Mir-489-v1  Mml-Mir-489-v1  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v1  Tni-Mir-489-v1  Xla-Mir-489-P1-v1  Xla-Mir-489-P2-v1  Xtr-Mir-489-v1 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM054685.2: 82851746-82851805 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489)		 Mir-489 CM054685.2: 82851746-82851805 [+] UCSC Ensembl
Mir-653 CM054685.2: 82852827-82852883 [+] UCSC Ensembl
Seed UGACAUC
Precursor
(pre-Mir +30nt flank)		 
GCUGACUACUGCUGUUGGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUUUACUUGAACCUUUAGGAGUGACAUCACAUAUACGGCAGCUAAACUGCUACAUGGGACAACAAUUAAGAG
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Structure
        10          20        30        40        50         
GCUGACUACUGCUGUUG--|      C     G             CGC     ACUUGA 
                   GUGGCAG UUGGU GUCGUAUGUGUGG   CAUUU      A
                   CAUCGUC AAUCG CGGCAUAUACACU   GUGAG      C
GAGAAUUAACAACAGGGUA^      A     A             ACA     GAUUUC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-489_5p* (predicted)
mirBase accessionNone
Sequence 
0- GGUCGUAUGUGUGGCGCCAUUU -22
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Mature sequence

Pab-Mir-489_3p (predicted)
mirBase accessionNone
Sequence 
38- GUGACAUCACAUAUACGGCAGC -60
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