MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-653

Family name MIR-653 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-653  Cfa-Mir-653  Cpo-Mir-653  Dno-Mir-653  Eca-Mir-653  Hsa-Mir-653  Mml-Mir-653  Mmr-Mir-653  Mmu-Mir-653  Ocu-Mir-653  Pab-Mir-653  Rno-Mir-653 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021922.1: 53364797-53364853 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-653)		 Mir-489 CM021922.1: 53363703-53363762 [+] UCSC Ensembl
Mir-653 CM021922.1: 53364797-53364853 [+] UCSC Ensembl
Seed UCACUAG
Precursor
(pre-Mir +30nt flank)		 
AGGUUCUUCUAAUUUUUCAUUCCUUCAGUGUUGAGACAAUCUCUACUGAAUCAGCUUUAAACAAGUUCACUAGAGUUUGUUUCAAUAUUGCAAGAAUGAUAAGAUGGAAGCUACUUU
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Structure
        10          20        30        40        50        
AGGUUCUUCUAAUUUUU--|    CUU              U     C     CAGCUU 
                   CAUUC   CAGUGUUGAGACAA CUCUA UGAAU      \
                   GUAAG   GUUAUAACUUUGUU GAGAU ACUUG      U
UUUCAUCGAAGGUAGAAUA^    AAC              U     C     AACAAA 
     110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
- +
To
Star sequence

Cja-Mir-653_5p* (predicted)
mirBase accessionNone
Sequence 
0- UUGAGACAAUCUCUACUGAAUC -22
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Mature sequence

Cja-Mir-653_3p (predicted)
mirBase accessionNone
Sequence 
35- UUCACUAGAGUUUGUUUCAAUA -57
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