Mir-653

MirGeneDB ID

Ocu-Mir-653

Family name

MIR-653 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-653

Paralogues

Orthologues

Bta-Mir-653 Cfa-Mir-653 Cja-Mir-653 Cpo-Mir-653 Dno-Mir-653 Eca-Mir-653 Hsa-Mir-653 Mml-Mir-653 Mmr-Mir-653 Mmu-Mir-653 Pab-Mir-653 Rno-Mir-653

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(oryCun2_add)

chr10: 35346249-35346307 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-653)

Mir-489 chr10: 35345574-35345633 [+] UCSC Ensembl
Mir-653 chr10: 35346249-35346307 [+] UCSC Ensembl

Seed

UGAAACA

Precursor
(pre-Mir +30nt flank)

CAGAGGUUCUGAUUUCCCAUUCUUUCAGUGUUGAAACAUCCUCUAUUGAAUUAGGCUUUCAACCAAGUUCACUGGAGUUUGUUUCAAUAUUGCAAGAAUGAUAAGAUUGAAGCUACUGU

Get precursor sequence

Structure

        10          20        30        40        50         
CAGAGGUUCUGAUUUCC--|      U             UC     U      AGGCUU 
                   CAUUCUU CAGUGUUGAAACA  CUCUA UGAAUU      \
                   GUAAGAA GUUAUAACUUUGU  GAGGU ACUUGA      U
UGUCAUCGAAGUUAGAAUA^      C             UU     C      ACCAAC 
       110       100        90        80        70        60