MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-653

Family name MIR-653 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-653
Paralogues
Orthologues Bta-Mir-653  Cfa-Mir-653  Cja-Mir-653  Cpo-Mir-653  Dno-Mir-653  Eca-Mir-653  Hsa-Mir-653  Mml-Mir-653  Mmr-Mir-653  Mmu-Mir-653  Ocu-Mir-653  Pab-Mir-653 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(rn6)		 chr4: 28658901-28658959 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-653)		 Mir-653 chr4: 28658901-28658959 [-] UCSC Ensembl
Mir-489 chr4: 28659547-28659606 [-] UCSC Ensembl
Seed UGAAACA
Precursor
(pre-Mir +30nt flank)		 
CUGAGGUUCUGAUUUUUCAUUCUUUCAGUGUUGAAACAUUCUCUACUGAACCAAGCUCCAAAACAAGUUCACUGGGGUUUGUUUCACUAUUGCAAGAAUUGCUAAGUAUGAAGCUGCUC
Get precursor sequence
Structure
        10          20        30        40        50         
CUGAGGUUCUGAUUUUUC--|     U     U       UU     C     CAAGCUC 
                    AUUCUU CAGUG UGAAACA  CUCUA UGAAC       \
                    UAAGAA GUUAU ACUUUGU  GGGGU ACUUG       C
CUCGUCGAAGUAUGAAUCGU^     C     C       UU     C     AACAAAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
- +
Dr Dr Ad Bi Bi Bi Bi Br Br Br Br Ce Ce Ce Ce Co Co Co Co Du Du Du Du Fa He He He Hi Hi Il Il Je Je Ki Ki Ki Ki Ki La Li Li Li Li Li Li Lu Me Me Mu Ov Pa Pa Pa Sk Sm So So So So Sp St St St St Te Te Th Ut Wh
Mature sequence

Rno-Mir-653_5p
mirBase accessionMIMAT0012838
Sequence 
0- UUGAAACAUUCUCUACUGAACC -22
Get sequence
Proposed targets microrna.org: MIMAT0012838
TargetScanVert: rno-miR-653-5p
miRDB: MIMAT0012838
Star sequence

Rno-Mir-653_3p*
mirBase accessionMIMAT0017361
Sequence 
37- UUCACUGGGGUUUGUUUCACUA -59
Get sequence
Proposed targets TargetScanVert: rno-miR-653-3p
miRDB: MIMAT0017361