MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-30c-2
Paralogues Rno-Mir-30-P1a  Rno-Mir-30-P1b  Rno-Mir-30-P1d  Rno-Mir-30-P2a  Rno-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pbv-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)
chr9: 29562389-29562450 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)
Mir-30-P1b chr9: 29542640-29542702 [+] UCSC Ensembl
Mir-30-P2b chr9: 29562389-29562450 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGCUGUAGAGAGCACUGAGUGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGAAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAAGAGAAAUG
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Structure
        10            20        30        40        50        60 
CUGCUGUAGAGAGCACU----|  UGA    UACU       U   ACA         GUGAAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      G
GUAAAGAGAAUCAACUAAAGG^  C--    CUCU       C   A--         AAGAAU 
120       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Ad Ad Br Br Br Ce Ce Ce Ce Co Co Co Co Dr Dr Du Du Du Du He He Hi Hi Il Il Je Je Ki Ki Ki Ki Li Li Li Li Me Me Mu Mu Mu Mu Mu Mu Mu Mu Ov Pa Pa St St St Te Ut Wh Br Fa He Ki La Li Li Lu Mu Pa Sk Sm Sp St Te Th
Mature sequence

Rno-Mir-30-P2b_5p

mirBase accessionMIMAT0000804
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000804
TargetScanVert: rno-miR-30c-5p
miRDB: MIMAT0000804
Star sequence

Rno-Mir-30-P2b_3p*

mirBase accessionMIMAT0005442
Sequence
40- CUGGGAGAAGGCUGUUUACUCU -62
Get sequence
Proposed targets microrna.org: MIMAT0005442
TargetScanVert: rno-miR-30c-2-3p
miRDB: MIMAT0005442