MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-30-P2b

Family name MIR-30 (all species)
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-30c
Paralogues Dre-Mir-30-P1a  Dre-Mir-30-P1b  Dre-Mir-30-P1d  Dre-Mir-30-P1o1  Dre-Mir-30-P2a  Dre-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Bta-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Eca-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Laf-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr13: 27804077-27804137 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)		 Mir-30-P1b chr13: 27795140-27795201 [+] UCSC Ensembl
Mir-30-P2b chr13: 27804077-27804137 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GACUUGGGAACCCAUAUGAGCUUCAGGGAGUGUAAACAUCCUACACUCUCAGCUGGAGCGCAGCCGAGGCCGGGAGUGGGAUGUUUGCGCUCUCUGGCUCAGGAACGCCCCUGUUCACUGU
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Structure
        10            20        30        40        50        60 
GACUUGGGAACCCAUAU----|   UU                  UA       A   GGAGCG 
                     GAGC  CAGGGAGUGUAAACAUCC  CACUCUC GCU      \
                     CUCG  GUCUCUCGCGUUUGUAGG  GUGAGGG CGG      C
UGUCACUUGUCCCCGCAAGGA^   --                  --       C   AGCCGA 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-30-P2b_5p
mirBase accessionMIMAT0001805
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
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Proposed targets TargetScanFish: dre-miR-30c
Star sequence

Dre-Mir-30-P2b_3p*
mirBase accessionMIMAT0031952
Sequence 
39- CCGGGAGUGGGAUGUUUGCGCU -61
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