Mir-30-P2b

MirGeneDB ID

Gga-Mir-30-P2b

Family name

MIR-30 (all species)

Species

Chicken (Gallus gallus)

MiRBase ID

gga-mir-30c-2

Paralogues

Gga-Mir-30-P1a Gga-Mir-30-P1b Gga-Mir-30-P1d Gga-Mir-30-P2a Gga-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Gallus_gallus.GRCg6a)

3: 82370050-82370111 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P1b 3: 82345435-82345498 [+] UCSC Ensembl
Mir-30-P2b 3: 82370050-82370111 [+] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

UUGCUUUCAAGAGCUCUGAGUGACAGGUACUGUAAACAUCCUACACUCUCAGCUGUGGAAACUAAGAAAGCUGGGAGAAGGCUGUUUACUCUCCCUGCCUUGGAAAUCAUCUGGAGGGCGAG

Get precursor sequence

Structure

        10            20        30        40        50        60 
UUGCUUUCAAGAGCUCU----|  UGA    UACU       U   ACA         GUGGAA 
                     GAG   CAGG    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCC    CAUUUGU GGA   GAGGGUCGA      C
GAGCGGGAGGUCUACUAAAGG^  C--    CUCU       C   A--         AAGAAU 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Ad	Br	Br	Ce	Ce	Ce	Ce	Gg	He	He	Hy	Hy	Ki	Ki	Li	Li	Lu	Lu	Ov	Pr	Pr	Sc	Sc	Sp	Sp	Te

Mature sequence

Gga-Mir-30-P2b_5p

mirBase accession

MIMAT0001137

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

TargetScanVert: gga-miR-30c-5p
miRDB: MIMAT0001137

Star sequence

Gga-Mir-30-P2b_3p*

mirBase accession

MIMAT0026515

Sequence

40- CUGGGAGAAGGCUGUUUACUCU -62

Get sequence

Proposed targets

TargetScanVert: gga-miR-30c-2-3p
miRDB: MIMAT0026515