MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-30-P1b

Family name MIR-30 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-30a
Paralogues Gga-Mir-30-P1a  Gga-Mir-30-P1d  Gga-Mir-30-P2a  Gga-Mir-30-P2b  Gga-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Eca-Mir-30-P1b  Ete-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 3: 82345435-82345498 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b 3: 82345435-82345498 [+] UCSC Ensembl
Mir-30-P2b 3: 82370050-82370111 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GAAUGUGUAUUGCUGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCCACAGACGUCAAGAAAUGUU
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Structure
        10          20        30        40        50        60  
GAAUGUGUAUUGCUGUU--|A    GA   A            UC           GUGAAGC 
                   G CAGU  GCG CUGUAAACAUCC  GACUGGAAGCU       A
                   C GUCA  CGU GACGUUUGUAGG  CUGACUUUCGG       G
UUGUAAAGAACUGCAGACA^C    AC   C            --           GGUAGAC 
  120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-30-P1b_5p
mirBase accessionMIMAT0001135
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
Proposed targets TargetScanVert: gga-miR-30a-5p
miRDB: MIMAT0001135
Star sequence

Gga-Mir-30-P1b_3p*
mirBase accessionMIMAT0001136
Sequence 
42- CUUUCAGUCGGAUGUUUGCAGC -64
Get sequence
Proposed targets TargetScanVert: gga-miR-30a-3p
miRDB: MIMAT0001136