MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-30-P2a

Family name MIR-30 (all species)
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-30b
Paralogues Gga-Mir-30-P1a  Gga-Mir-30-P1b  Gga-Mir-30-P1d  Gga-Mir-30-P2b  Gga-Mir-30-P2d 
Orthologues Aca-Mir-30-P2a  Ami-Mir-30-P2a  Bta-Mir-30-P2a  Cfa-Mir-30-P2a  Cja-Mir-30-P2a  Cmi-Mir-30-P2a  Cpi-Mir-30-P2a  Cpo-Mir-30-P2a  Dno-Mir-30-P2a  Dre-Mir-30-P2a  Eca-Mir-30-P2a  Ete-Mir-30-P2a  Gja-Mir-30-P2a  Gmo-Mir-30-P2a  Hsa-Mir-30-P2a  Laf-Mir-30-P2a  Lch-Mir-30-P2a  Loc-Mir-30-P2a  Mal-Mir-30-P2a  Mdo-Mir-30-P2a  Mml-Mir-30-P2a  Mmr-Mir-30-P2a  Mmu-Mir-30-P2a  Mun-Mir-30-P2a  Neu-Mir-30-P2a  Oan-Mir-30-P2a  Ocu-Mir-30-P2a  Pab-Mir-30-P2a  Pbv-Mir-30-P2a  Rno-Mir-30-P2a  Sha-Mir-30-P2a  Spt-Mir-30-P2a  Sto-Mir-30-P2a  Tgu-Mir-30-P2a  Tni-Mir-30-P2a  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xtr-Mir-30-P2a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Gallus_gallus.GRCg6a)		 2: 142644205-142644264 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2a)		 Mir-30-P2a 2: 142644205-142644264 [-] UCSC Ensembl
Mir-30-P1a 2: 142647738-142647796 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
AUUUAUAUUGUUAAGCUAACUUUUAGUUCCUGUAAACAUCCUACACUCAGCUAUAACAAGUGGUAGGGCUGGGGGGUGGAUGUUUACUUCAACUGACUUGGAAAGGCAGCUUUCCUGAAU
Get precursor sequence
Structure
        10        20          30        40         50         
AUUUAUAUUGUUAAGCUAACUU--|     CCU          U  A-       AUAACA 
                        UUAGUU   GUAAACAUCC AC  CUCAGCU      A
                        AGUCAA   CAUUUGUAGG UG  GGGUCGG      G
UAAGUCCUUUCGACGGAAAGGUUC^     CUU          -  GG       GAUGGU 
.       110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-30-P2a_5p
mirBase accessionMIMAT0001130
Sequence 
0- UGUAAACAUCCUACACUCAGCU -22
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Proposed targets TargetScanVert: gga-miR-30b-5p
miRDB: MIMAT0001130
Star sequence

Gga-Mir-30-P2a_3p*
mirBase accessionMIMAT0026512
Sequence 
38- CUGGGGGGUGGAUGUUUACUUC -60
Get sequence
Proposed targets TargetScanVert: gga-miR-30b-3p
miRDB: MIMAT0026512