Mir-30-P2a

MirGeneDB ID

Sha-Mir-30-P2a

Family name

MIR-30 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-30-P1a Sha-Mir-30-P1b Sha-Mir-30-P1d Sha-Mir-30-P2b Sha-Mir-30-P2d

Orthologues

Aca-Mir-30-P2a Ami-Mir-30-P2a Bta-Mir-30-P2a Cfa-Mir-30-P2a Cja-Mir-30-P2a Cmi-Mir-30-P2a Cpi-Mir-30-P2a Cpo-Mir-30-P2a Dno-Mir-30-P2a Dre-Mir-30-P2a Eca-Mir-30-P2a Ete-Mir-30-P2a Gga-Mir-30-P2a Gja-Mir-30-P2a Gmo-Mir-30-P2a Hsa-Mir-30-P2a Laf-Mir-30-P2a Lch-Mir-30-P2a Loc-Mir-30-P2a Mal-Mir-30-P2a Mdo-Mir-30-P2a Mml-Mir-30-P2a Mmr-Mir-30-P2a Mmu-Mir-30-P2a Mun-Mir-30-P2a Neu-Mir-30-P2a Oan-Mir-30-P2a Ocu-Mir-30-P2a Pab-Mir-30-P2a Pbv-Mir-30-P2a Rno-Mir-30-P2a Spt-Mir-30-P2a Sto-Mir-30-P2a Tgu-Mir-30-P2a Tni-Mir-30-P2a Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xtr-Mir-30-P2a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL841396.1: 3876298-3876357 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2a)

Mir-30-P2a GL841396.1: 3876298-3876357 [-] UCSC Ensembl
Mir-30-P1a GL841396.1: 3882213-3882274 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

AAGCUGGGCAUUAAACUGAGUUCCAGUUCAUGUAAACAUCCUACACUCAGCUGUAACACAUAGAUUGGCUGGGAGGUGGAUGUUUACUUCAGCUGACUUGGAAUAACAGCCUUUUAACAU

Get precursor sequence

Structure

        10            20        30        40         50         
AAGCUGGGCAUUAAACU----|   UC     CAU          U  A-       GUAACA 
                     GAGU  CAGUU   GUAAACAUCC AC  CUCAGCU      C
                     UUCA  GUCGA   CAUUUGUAGG UG  GGGUCGG      A
UACAAUUUUCCGACAAUAAGG^   --     CUU          -  GA       UUAGAU 
.       110       100          90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-30-P2a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCAGCU -22

Get sequence

Star sequence

Sha-Mir-30-P2a_3p*

mirBase accession

None

Sequence

38- CUGGGAGGUGGAUGUUUACUUC -60

Get sequence