Mir-30-P1a

MirGeneDB ID

Sha-Mir-30-P1a

Family name

MIR-30 (all species)

Species

Tasmanian devil (Sarcophilus harrisii)

MiRBase ID

Paralogues

Sha-Mir-30-P1b Sha-Mir-30-P1d Sha-Mir-30-P2a Sha-Mir-30-P2b Sha-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(DEVIL_add)

GL841396.1: 3882213-3882274 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a GL841396.1: 3876298-3876357 [-] UCSC Ensembl
Mir-30-P1a GL841396.1: 3882213-3882274 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

AGUUGGUAAUUGUCAAUGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCCAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAAUCACAAACAUCAUCAUGUUA

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Structure

        10        20          30        40        50        60 
AGUUGGUAAUUGUCAAUGAA--|   U  U  U         CCC           GUAAGA 
                      AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                      UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AUUGUACUACUACAAACACUAA^   C  U  U         A--           ACCGAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Bo	Br	He	Ki	Li	Ly	Pa	Sk	Sp	Te

Mature sequence

Sha-Mir-30-P1a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Sha-Mir-30-P1a_3p*

mirBase accession

None

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

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