MirGeneDB 2.1
MirGeneDB ID

Cpo-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-30d
Paralogues Cpo-Mir-30-P1b  Cpo-Mir-30-P1d  Cpo-Mir-30-P2a  Cpo-Mir-30-P2b  Cpo-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)		 scaffold_51: 2020362-2020423 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P1a scaffold_51: 2020362-2020423 [+] UCSC
Mir-30-P2a scaffold_51: 2026508-2026567 [+] UCSC
Precursor
(pre-Mir +30nt flank)
UGCUAACUUGCUCUUUAGAAAGUCUGCUGUUGUAAACAUCCCCGACUGGAAGCUGUACAACACAGCUGAGCUUUCAGUCAGAUGUUUGCUGCUGCUGGCUCUCACAGACAUCCUCGUGGCAC
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Structure
        10          20        30        40        50        60 
UGCUAACUUGCUCUUUA--| A    U  U  U         CCC           GUACAA 
                   GA AGUC GC GU GUAAACAUC   GACUGGAAGCU      C
                   CU UCGG CG CG CGUUUGUAG   CUGACUUUCGA      A
CACGGUGCUCCUACAGACA^ C    U  U  U         A--           GUCGAC 
120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Cpo-Mir-30-P1a_5p
mirBase accessionMIMAT0046910
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Cpo-Mir-30-P1a_3p*
mirBase accessionMIMAT0046911
Sequence 
40- CUUUCAGUCAGAUGUUUGCUGC -62
Get sequence