| MirGeneDB ID | Lch-Mir-30-P1a |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-30-P1b Lch-Mir-30-P1d Lch-Mir-30-P2a Lch-Mir-30-P2b Lch-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH131061.1: 46578-46640 [+] Ensembl |
| Clustered miRNAs (< 50kb from Mir-30-P1a) |
Mir-30-P1a
JH131061.1: 46578-46640 [+]
Ensembl
Mir-30-P2a JH131061.1: 48307-48366 [+] Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
CCACGACCCGGCCCUGUUGUAGUCUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUAAAUCAUGACGACAGCUUUCAGUCAGAUGUUUGCUGUUGCCGGCUGCCUGAGUCCAUCGCCUGCAUUGet precursor sequence |
| Structure | 10 20 30 40 50 60 CCACGACCCGGCCCUGUU--| U U U CCC GUAAAUC GUAGUC GU GC GUAAACAUC GACUGGAAGCU \ CGUCGG CG UG CGUUUGUAG CUGACUUUCGA A UUACGUCCGCUACCUGAGUC^ C U U A-- CAGCAGU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-30-P1a_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
|
| Star sequence | Lch-Mir-30-P1a_3p* (predicted) |
| mirBase accession | None |
| Sequence |
41- CUUUCAGUCAGAUGUUUGCUGU -63
Get sequence
|
