| MirGeneDB ID | Lch-Mir-30-P2b |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-30-P1a Lch-Mir-30-P1b Lch-Mir-30-P1d Lch-Mir-30-P2a Lch-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Hsa-Mir-30-P2b Laf-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH132513.1: 1376-1437 [-] Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
ACUUCUUAAAGAUCACUGAGUGACAGACAAUGUAAACAUCCUACACUCUCAGCUGUGGCAAGUAAAGGAGCUGGGAGAAGGAUGUUUACGCUUUCUGCCUUGGAAACUCAACUGAUGGGGAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 ACUUCUUAAAGAUCACU----| UGA CAA ACA GUGGCA GAG CAGA UGUAAACAUCCU CUCUCAGCU A UUC GUCU GCAUUUGUAGGA GAGGGUCGA G GAGGGGUAGUCAACUCAAAGG^ C-- UUC A-- GGAAAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-30-P2b_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
|
| Star sequence | Lch-Mir-30-P2b_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- CUGGGAGAAGGAUGUUUACGCU -62
Get sequence
|
