Mir-30-P2b

MirGeneDB ID

Hsa-Mir-30-P2b

Family name

MIR-30 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30c-2

Paralogues

Hsa-Mir-30-P1a Hsa-Mir-30-P1b Hsa-Mir-30-P1d Hsa-Mir-30-P2a Hsa-Mir-30-P2d

Orthologues

Aca-Mir-30-P2b Ami-Mir-30-P2b Bta-Mir-30-P2b Cfa-Mir-30-P2b Cja-Mir-30-P2b Cli-Mir-30-P2b Cmi-Mir-30-P2b Cpi-Mir-30-P2b Cpo-Mir-30-P2b Dno-Mir-30-P2b Dre-Mir-30-P2b Eca-Mir-30-P2b Ete-Mir-30-P2b Gga-Mir-30-P2b Gja-Mir-30-P2b Gmo-Mir-30-P2b Laf-Mir-30-P2b Lch-Mir-30-P2b Loc-Mir-30-P2b Mal-Mir-30-P2b Mdo-Mir-30-P2b Mml-Mir-30-P2b Mmr-Mir-30-P2b Mmu-Mir-30-P2b Mun-Mir-30-P2b Neu-Mir-30-P2b Oan-Mir-30-P2b Ocu-Mir-30-P2b Pab-Mir-30-P2b Pbv-Mir-30-P2b Rno-Mir-30-P2b Sha-Mir-30-P2b Spt-Mir-30-P2b Sto-Mir-30-P2b Tgu-Mir-30-P2b Tni-Mir-30-P2b Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xtr-Mir-30-P2b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr6: 71376964-71377025 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2b)

Mir-30-P2b chr6: 71376964-71377025 [-] UCSC Ensembl
Mir-30-P1b chr6: 71403554-71403616 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CCAUCCUAGAGAGCACUGAGCGACAGAUACUGUAAACAUCCUACACUCUCAGCUGUGGAAAGUAAGAAAGCUGGGAGAAGGCUGUUUACUCUUUCUGCCUUGGAAGUCAACUAAAGAGAAAU

Get precursor sequence

Structure

        10            20        30        40        50        60 
CCAUCCUAGAGAGCACU----|  CGA    UACU       U   ACA         GUGGAA 
                     GAG   CAGA    GUAAACA CCU   CUCUCAGCU      A
                     UUC   GUCU    CAUUUGU GGA   GAGGGUCGA      G
UAAAGAGAAAUCAACUGAAGG^  C--    UUCU       C   A--         AAGAAU 
120       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-30-P2b_5p

mirBase accession

MIMAT0000244

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000244
TargetScanVert: hsa-miR-30c-5p
TargetMiner: hsa-miR-30c-5p
miRDB: MIMAT0000244

Star sequence

Hsa-Mir-30-P2b_3p*

mirBase accession

MIMAT0004550

Sequence

40- CUGGGAGAAGGCUGUUUACUCU -62

Get sequence

Proposed targets

microrna.org: MIMAT0004550
TargetScanVert: hsa-miR-30c-2-3p
TargetMiner: hsa-miR-30c-2-3p
miRDB: MIMAT0004550