Mir-30-P2d

MirGeneDB ID

Hsa-Mir-30-P2d

Family name

MIR-30 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30c-1

Paralogues

Hsa-Mir-30-P1a Hsa-Mir-30-P1b Hsa-Mir-30-P1d Hsa-Mir-30-P2a Hsa-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr1: 40757300-40757360 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P1d chr1: 40754371-40754434 [+] UCSC Ensembl
Mir-30-P2d chr1: 40757300-40757360 [+] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CCCUGUGGGCUAUAACCAUGCUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACAUCAGCUGAAGAAG

Get precursor sequence

Structure

        10            20        30        40        50        60 
CCCUGUGGGCUAUAACC----|  CU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGG      U
GAAGAAGUCGACUACAAAAGG^  --    UUCCU       U   A--         UGGAAC 
 .       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-30-P2d_5p

mirBase accession

MIMAT0000244

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000244
TargetScanVert: hsa-miR-30c-5p
TargetMiner: hsa-miR-30c-5p
miRDB: MIMAT0000244

Star sequence

Hsa-Mir-30-P2d_3p*

mirBase accession

MIMAT0004674

Sequence

39- CUGGGAGAGGGUUGUUUACUCC -61

Get sequence

Proposed targets

microrna.org: MIMAT0004674
TargetScanVert: hsa-miR-30c-1-3p
TargetMiner: hsa-miR-30c-1-3p
miRDB: MIMAT0004674