MirGeneDB 2.1

MirGeneDB ID

Sto-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-30-P1a  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Sto-Mir-30-P2a  Sto-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01005240.1: 117707-117766 [-]
Precursor
(pre-Mir +30nt flank)
AUCACAGUCCCAACACUGUGCUCUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGGUCUGACUGAGCUGGGAGAGGGAUGUUUGCUCAUUCUGACACAGACUGAGCAGCAACAAGUCA
Get precursor sequence
Structure
        10            20        30        40        50        60
AUCACAGUCCCAACACU----|  C  U  U   U           ACA         GUGGU 
                     GUG UC AG GUG GUAAACAUCCU   CUCUCAGCU     C
                     CAC AG UC UAC CGUUUGUAGGG   GAGGGUCGA     U
ACUGAACAACGACGAGUCAGA^  -  -  U   U           A--         GUCAG 
.       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Sto-Mir-30-P2d_5p

mirBase accessionNone
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Star sequence

Sto-Mir-30-P2d_3p*

mirBase accessionNone
Sequence
38- CUGGGAGAGGGAUGUUUGCUCA -60
Get sequence