MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-30-P2d

Family name MIR-30 (all species)
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-30c-1
Paralogues Cfa-Mir-30-P1a  Cfa-Mir-30-P1b  Cfa-Mir-30-P1d  Cfa-Mir-30-P2a  Cfa-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr15: 2280050-2280110 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)		 Mir-30-P2d chr15: 2280050-2280110 [-] UCSC Ensembl
Mir-30-P1d chr15: 2283306-2283369 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
ACCCUCAGGCUCUAACCAUGCCGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACGUCAGCUGAAGAAG
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Structure
        10        20           30        40        50        60 
ACCCUCAGGCUCUAACCAUG  ---|   UGUGU       U   ACA         GUGAGC 
                    CC   GUAG     GUAAACA CCU   CUCUCAGCU      \
                    GG   CGUC     CAUUUGU GGG   GAGGGUCGG      U
GAAGAAGUCGACUGCAAAA-  UAC^   UUCCU       U   A--         UGGAAC 
 .       110        100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-30-P2d_5p
mirBase accessionMIMAT0006605
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Proposed targets TargetScanVert: cfa-miR-30c
miRDB: MIMAT0006605
Star sequence

Cfa-Mir-30-P2d_3p*
mirBase accessionNone
Sequence 
39- CUGGGAGAGGGUUGUUUACUCC -61
Get sequence