Mir-30-P2d

MirGeneDB ID

Cmi-Mir-30-P2d

Family name

MIR-30 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-30-P1a Cmi-Mir-30-P1b Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cmi-Mir-30-P2a Cmi-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI635890.1: 6106040-6106099 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P1d3 KI635890.1: 6103023-6103085 [+] UCSC Ensembl
Mir-30-P1d4 KI635890.1: 6103426-6103488 [+] UCSC Ensembl
Mir-30-P2d KI635890.1: 6106040-6106099 [+] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

GCUGACAAUGCAGUGCUGUGCACUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGGUGUAGCUGAGCUGGGAGGAGGAUGCUUACUCAUUCUGGCACAGAUGGAGCAGCAGCCACGUG

Get precursor sequence

Structure

        10            20        30        40        50        60
GCUGACAAUGCAGUGCU----|   AC   U   U    A      ACA         GUGGU 
                     GUGC  UAG GUG GUAA CAUCCU   CUCUCAGCU     G
                     CACG  GUC UAC CAUU GUAGGA   GAGGGUCGA     U
GUGCACCGACGACGAGGUAGA^   --   U   U    C      G--         GUCGA 
.       110       100          90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-30-P2d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Cmi-Mir-30-P2d_3p*

mirBase accession

None

Sequence

38- CUGGGAGGAGGAUGCUUACUCA -60

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