MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-30-P1d3

Family name MIR-30 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-30-P1a  Cmi-Mir-30-P1b  Cmi-Mir-30-P1d4  Cmi-Mir-30-P2a  Cmi-Mir-30-P2b  Cmi-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Eca-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xtr-Mir-30-P1d 
Node of Origin (locus) Chondrichthyes
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635890.1: 6103023-6103085 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d3)		 Mir-30-P1d3 KI635890.1: 6103023-6103085 [+] UCSC Ensembl
Mir-30-P1d4 KI635890.1: 6103426-6103488 [+] UCSC Ensembl
Mir-30-P2d KI635890.1: 6106040-6106099 [+] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
CAUCCAAAUAUUCUGAGAGUGCAGAGGUCAUGUAAACAUCUUUAACUGAAAGCUUUACCUGACAAAUAUAACUUUCAGUUAGAUGUUUAUGUUAUCUUGCUACUAAAAGUCAAAUUUCCGUUU
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Structure
        10          20         30        40        50        60  
CAUCCAAAUAUUCUGAG--   -|  G    C            UU         CUUUACCUG 
                   AGU GCA AGGU AUGUAAACAUCU  AACUGAAAG         \
                   UCA CGU UCUA UGUAUUUGUAGA  UUGACUUUC         A
UUUGCCUUUAAACUGAAAA   U^  -    U            --         AAUAUAAAC 
 120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Mature sequence

Cmi-Mir-30-P1d3_5p (predicted)
mirBase accessionNone
Sequence 
0- UGUAAACAUCUUUAACUGAAAGCU -24
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Star sequence

Cmi-Mir-30-P1d3_3p* (predicted)
mirBase accessionNone
Sequence 
41- CUUUCAGUUAGAUGUUUAUGUU -63
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