Mir-30-P1d

MirGeneDB ID

Mmu-Mir-30-P1d

Family name

MIR-30 (all species)

Species

House mouse (Mus musculus)

MiRBase ID

mmu-mir-30e

Paralogues

Mmu-Mir-30-P1a Mmu-Mir-30-P1b Mmu-Mir-30-P2a Mmu-Mir-30-P2b Mmu-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(mm10)

chr4: 120772618-120772681 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P2d chr4: 120769546-120769606 [-] UCSC Ensembl
Mir-30-P1d chr4: 120772618-120772681 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CUCUUUAUUUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUGAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGUCGUCCCCGGCUGCG

Get precursor sequence

Structure

        10            20        30        40        50        60  
CUCUUUAUUUUUCUGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
GCGUCGGCCCCUGCUGACACC^     --  GC            --           GGAGAGU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Br	Ce	Ce	Em	Em	He	Ki	Li	Lu	Ov	Pa	Sk	Sp	Te

Mature sequence

Mmu-Mir-30-P1d_5p

mirBase accession

MIMAT0000248

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000248
TargetScanVert: mmu-miR-30e-5p
miRDB: MIMAT0000248

Co-mature sequence

Mmu-Mir-30-P1d_3p

mirBase accession

MIMAT0000249

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence

Proposed targets

microrna.org: MIMAT0000249
TargetScanVert: mmu-miR-30e-3p
miRDB: MIMAT0000249