MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-30e
Paralogues Cpi-Mir-30-P1a  Cpi-Mir-30-P1b  Cpi-Mir-30-P2a  Cpi-Mir-30-P2b  Cpi-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584691: 5735578-5735642 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P1d JH584691: 5735578-5735642 [+] UCSC Ensembl
Mir-30-P2d JH584691: 5739664-5739724 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUGCAUUUUUCUGGGCAGUCGUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUAGAAGGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAGUCAUCCUGAGCACCA
Get precursor sequence
Structure
        10            20        30        40        50        60   
UUCUGCAUUUUUCUGGG----|    GU   UA            UU           GUAAGGUG 
                     CAGUC  UGC  CUGUAAACAUCC  GACUGGAAGCU        \
                     GUCGG  ACG  GACAUUUGUAGG  CUGACUUUCGA        C
ACCACGAGUCCUACUGACACC^    --   GC            --           GGGAAGAU 
   120       110       100          90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-30-P1d_5p

mirBase accessionMIMAT0037683
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Star sequence

Cpi-Mir-30-P1d_3p*

mirBase accessionMIMAT0037684
Sequence
43- CUUUCAGUCGGAUGUUUACAGC -65
Get sequence