MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-30e
Paralogues Aca-Mir-30-P1a  Aca-Mir-30-P1b  Aca-Mir-30-P2a  Aca-Mir-30-P2b  Aca-Mir-30-P2d 
Orthologues Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
GL343308.1: 250303-250366 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCCUGGAUCUAUGUAGGCAGUUGUGCUCCUGUAAACAUCCUUGACUGGAAGCUGUGCAAGGCUCAAAGGGGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCUGCGUUCCUCCUGAAACCAC
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Structure
        10           20        30        40        50        60  
AUCCUGGAUCUAUGUAG---|     G    C            UU           GUGCAAG 
                    GCAGUU UGCU CUGUAAACAUCC  GACUGGAAGCU       G
                    CGUCGG ACGG GACAUUUGUAGG  CUGACUUUCGG       C
CACCAAAGUCCUCCUUGCGU^     -    C            --           GGAAACU 
  120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sk To Wh
Mature sequence

Aca-Mir-30-P1d_5p

mirBase accessionMIMAT0021928
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Co-mature sequence

Aca-Mir-30-P1d_3p

mirBase accessionMIMAT0021929
Sequence
42- CUUUCAGUCGGAUGUUUACAGC -64
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