| MirGeneDB ID | Spt-Mir-30-P1d |
|---|---|
| Family name | MIR-30 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-30-P1a Spt-Mir-30-P1b Spt-Mir-30-P2a Spt-Mir-30-P2b Spt-Mir-30-P2d |
| Orthologues | Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cfa-Mir-30-P1d Cja-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Eca-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Laf-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmr-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Neu-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pab-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008240.1: 2041178-2041241 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-30-P1d) |
Mir-30-P2d
QEPC01008240.1: 2016723-2016783 [-]
UCSC
Ensembl
Mir-30-P1d QEPC01008240.1: 2041178-2041241 [-] UCSC Ensembl |
| Seed | GUAAACA |
| Precursor (pre-Mir +30nt flank) |
UUGUGCAUCUUUAUGGGCAGUCGUUGCUCCUGUAAACAUCCUUGACUGGAAGCUGUAUGGUGUUAAAAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGUUGCCACAGAACUCCUGGGCUCAGGet precursor sequence |
| Structure | 10 20 30 40 50 60 UUGUGCAUCUUUAUGGG----| GU GU C UU GUAUGGU CA C UGCU CUGUAAACAUCC GACUGGAAGCU G GU G ACGG GACAUUUGUAGG CUGACUUUCGA U GACUCGGGUCCUCAAGACACC^ UG -- C -- GGAAAAU 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Spt-Mir-30-P1d_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
|
| Star sequence | Spt-Mir-30-P1d_3p* (predicted) |
| mirBase accession | None |
| Sequence |
42- CUUUCAGUCGGAUGUUUACAGC -64
Get sequence
|
