MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-30-P1d

Family name MIR-30 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-30e
Paralogues Eca-Mir-30-P1a  Eca-Mir-30-P1b  Eca-Mir-30-P2a  Eca-Mir-30-P2b  Eca-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cja-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Laf-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmr-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Neu-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pab-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009149.1: 17482949-17483012 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1d)		 Mir-30-P2d CM009149.1: 17480027-17480087 [-] UCSC Ensembl
Mir-30-P1d CM009149.1: 17482949-17483012 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UCUCCGUUCUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGUUCAGAGGAGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCGUCCCCGGCUGUG
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Structure
        10            20        30        40        50        60  
UCUCCGUUCUUUCUGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGA       U
GUGUCGGCCCCUGCUGGCACC^     --  GC            --           GGAGACU 
  120       110       100          90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-30-P1d_5p
mirBase accessionMIMAT0012916
Sequence 
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Star sequence

Eca-Mir-30-P1d_3p*
mirBase accessionNone
Sequence 
42- CUUUCAGUCGGAUGUUUACAGC -64
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