MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-30-P1a

Family name MIR-30 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-30d
Paralogues Eca-Mir-30-P1b  Eca-Mir-30-P1d  Eca-Mir-30-P2a  Eca-Mir-30-P2b  Eca-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cja-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Laf-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmr-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Neu-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pab-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009156.1: 77319230-77319291 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P2a CM009156.1: 77314898-77314957 [-] UCSC Ensembl
Mir-30-P1a CM009156.1: 77319230-77319291 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
UGUUACUUUGUUGUUCAGAAAGUCUGUGGUUGUAAACAUCCCCGACUGGAAGCUGUGAGACAUGGCUAAGCUUUCAGUCAGAUGUUUGCUGCGACCGGCUGUUCACAGACGUCAUUUUGGUG
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Structure
        10         20         30        40        50        60 
UGUUACUUUGUUGUUCA-   -|   U  G  U         CCC           GUGAGA 
                  GAA AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
GUGGUUUUACUGCAGACA   G^   C  G  U         A--           AUCGGU 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-30-P1a_5p
mirBase accessionMIMAT0013006
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Eca-Mir-30-P1a_3p*
mirBase accessionNone
Sequence 
40- CUUUCAGUCAGAUGUUUGCUGC -62
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