Mir-30-P1a

MirGeneDB ID

Ete-Mir-30-P1a

Family name

MIR-30 (all species)

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-30-P1b Ete-Mir-30-P1d Ete-Mir-30-P2a Ete-Mir-30-P2b Ete-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(echTel2)

JH980295: 6797535-6797594 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P1a JH980295: 6797535-6797594 [+] UCSC
Mir-30-P2a JH980295: 6799925-6799983 [+] UCSC

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CCCGUGGAGCGACUCCCGAACGCCUGUUGCUGUAAACAUCCCCGACUGGAAGCUGUGACUCUGCCGAGCUUUCAGUCUGAUGUUUGCUCCAGCCAGCUGUUCAUGGGCAUCACCCUGUGU

Get precursor sequence

Structure

        10         20         30        40        50        60
CCCGUGGAGCGACUCCC-    -| CU    CU         CCC           GUGAC 
                  GAAC GC  GUUG  GUAAACAUC   GACUGGAAGCU     U
                  CUUG CG  CGAC  CGUUUGUAG   CUGACUUUCGA     C
UGUGUCCCACUACGGGUA    U^ AC    CU         U--           GCCGU 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Ete-Mir-30-P1a_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Star sequence

Ete-Mir-30-P1a_3p* (predicted)

mirBase accession

None

Sequence

38- CUUUCAGUCUGAUGUUUGCUCC -60

Get sequence