MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-30-P1b

Family name MIR-30 (all species)
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues Ete-Mir-30-P1a  Ete-Mir-30-P1d  Ete-Mir-30-P2a  Ete-Mir-30-P2b  Ete-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cja-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Eca-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Laf-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmr-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pab-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(echTel2)		 JH980293: 89828234-89828296 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b JH980293: 89828234-89828296 [+] UCSC
Mir-30-P2b JH980293: 89870783-89870844 [+] UCSC
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GGUACAGCCCUGCUGCUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGCCUCCAACUUCCCCGUGCUGC
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Structure
        10          20        30        40        50        60  
GGUACAGCCCUGCUGCUGA--|    A   A            UC           GUGAAGC 
                     CAGUG GCG CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
CGUCGUGCCCCUUCAACCUCC^    C   C            --           GUAGACA 
 120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
To
Mature sequence

Ete-Mir-30-P1b_5p
mirBase accessionNone
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
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Star sequence

Ete-Mir-30-P1b_3p*
mirBase accessionNone
Sequence 
41- CUUUCAGUCGGAUGUUUGCAGC -63
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