MirGeneDB 2.1
MirGeneDB ID

Ami-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-30a
Paralogues Ami-Mir-30-P1a  Ami-Mir-30-P1d  Ami-Mir-30-P2a  Ami-Mir-30-P2b  Ami-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mdo-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017707897.1: 1465843-1465906 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-30-P1b)		 Mir-30-P1b NW_017707897.1: 1465843-1465906 [+] UCSC
Mir-30-P2b NW_017707897.1: 1500946-1501007 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GAAUGUGUAUUGCUGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCCAACUGCCACAGACUUCAAGAAAUGUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAUGUGUAUUGCUGUU--|A    GA   A            UC           GUGAAGC 
                   G CAGU  GCG CUGUAAACAUCC  GACUGGAAGCU       A
                   C GUCA  CGU GACGUUUGUAGG  CUGACUUUCGG       G
UUGUAAAGAACUUCAGACA^C    AC   C            --           GGUAGAC 
  120       110       100        90          80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-30-P1b_5p
mirBase accessionMIMAT0038077
Sequence 
0- UGUAAACAUCCUCGACUGGAAGCU -24
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Star sequence

Ami-Mir-30-P1b_3p*
mirBase accessionMIMAT0038078
Sequence 
42- CUUUCAGUCGGAUGUUUGCAGC -64
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