MirGeneDB 2.1

MirGeneDB ID

Mdo-Mir-30-P1b

Family name MIR-30 (all species)
Seed GUAAACA
Species Gray short-tailed opossum (Monodelphis domestica)
MiRBase ID mdo-mir-30a
Paralogues Mdo-Mir-30-P1a  Mdo-Mir-30-P1d  Mdo-Mir-30-P2a  Mdo-Mir-30-P2b  Mdo-Mir-30-P2d 
Orthologues Aca-Mir-30-P1b  Ami-Mir-30-P1b  Bta-Mir-30-P1b  Cfa-Mir-30-P1b  Cli-Mir-30-P1b  Cmi-Mir-30-P1b  Cpi-Mir-30-P1b  Cpo-Mir-30-P1b  Dno-Mir-30-P1b  Dre-Mir-30-P1b  Ete-Mir-30-P1b  Gga-Mir-30-P1b  Gja-Mir-30-P1b  Gmo-Mir-30-P1b  Hsa-Mir-30-P1b  Lch-Mir-30-P1b  Loc-Mir-30-P1b  Mal-Mir-30-P1b  Mml-Mir-30-P1b  Mmu-Mir-30-P1b  Mun-Mir-30-P1b  Oan-Mir-30-P1b  Ocu-Mir-30-P1b  Pbv-Mir-30-P1b  Rno-Mir-30-P1b  Sha-Mir-30-P1b  Spt-Mir-30-P1b  Tgu-Mir-30-P1b  Tni-Mir-30-P1b  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xtr-Mir-30-P1b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(monDom5_add)
2: 322692515-322692578 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1b)
Mir-30-P2b 2: 322643034-322643094 [-] UCSC Ensembl
Mir-30-P1b 2: 322692515-322692578 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUGCAUAUUGCUGUUGACAGUGAGCGGCUGUAAACAUCCUCGACUGGAAGCUGUGAAGCAGCAGAUGGGGCUUUCAGUCGGAUGUUUGCAGCUGCUUACUGCCUCAGACUUCAAGGAGUGUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
GAAUGCAUAUUGCUGUUGA--|                     UC           GUGAAGC 
                     CAGUGAGCGGCUGUAAACAUCC  GACUGGAAGCU       A
                     GUCAUUCGUCGACGUUUGUAGG  CUGACUUUCGG       G
UUGUGAGGAACUUCAGACUCC^                     --           GGUAGAC 
  120       110       100        90          80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Mdo-Mir-30-P1b_5p

mirBase accessionMIMAT0004093
Sequence
0- UGUAAACAUCCUCGACUGGAAGCU -24
Get sequence
Proposed targets TargetScanVert: mdo-miR-30a-5p
Star sequence

Mdo-Mir-30-P1b_3p*

mirBase accessionMIMAT0026652
Sequence
42- CUUUCAGUCGGAUGUUUGCAGC -64
Get sequence
Proposed targets TargetScanVert: mdo-miR-30a-3p