Mir-30-P1b

MirGeneDB ID

Hsa-Mir-30-P1b

Family name

MIR-30 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30a

Paralogues

Hsa-Mir-30-P1a Hsa-Mir-30-P1d Hsa-Mir-30-P2a Hsa-Mir-30-P2b Hsa-Mir-30-P2d

Orthologues

Aca-Mir-30-P1b Ami-Mir-30-P1b Bta-Mir-30-P1b Cfa-Mir-30-P1b Cja-Mir-30-P1b Cli-Mir-30-P1b Cmi-Mir-30-P1b Cpi-Mir-30-P1b Cpo-Mir-30-P1b Dno-Mir-30-P1b Dre-Mir-30-P1b Eca-Mir-30-P1b Ete-Mir-30-P1b Gga-Mir-30-P1b Gja-Mir-30-P1b Gmo-Mir-30-P1b Laf-Mir-30-P1b Lch-Mir-30-P1b Loc-Mir-30-P1b Mal-Mir-30-P1b Mdo-Mir-30-P1b Mml-Mir-30-P1b Mmr-Mir-30-P1b Mmu-Mir-30-P1b Mun-Mir-30-P1b Oan-Mir-30-P1b Ocu-Mir-30-P1b Pab-Mir-30-P1b Pbv-Mir-30-P1b Rno-Mir-30-P1b Sha-Mir-30-P1b Spt-Mir-30-P1b Tgu-Mir-30-P1b Tni-Mir-30-P1b Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xtr-Mir-30-P1b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr6: 71403554-71403616 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1b)

Mir-30-P2b chr6: 71376964-71377025 [-] UCSC Ensembl
Mir-30-P1b chr6: 71403554-71403616 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

GAAGGUAUAUUGCUGUUGACAGUGAGCGACUGUAAACAUCCUCGACUGGAAGCUGUGAAGCCACAGAUGGGCUUUCAGUCGGAUGUUUGCAGCUGCCUACUGCCUCGGACUUCAAGGGGCUAC

Get precursor sequence

Structure

        10          20        30        40        50        60  
GAAGGUAUAUUGCUGUUGA--|    A   A            UC           GUGAAGC 
                     CAGUG GCG CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCAU CGU GACGUUUGUAGG  CUGACUUUCGG       C
CAUCGGGGAACUUCAGGCUCC^    C   C            --           GUAGACA 
 120       110       100        90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-30-P1b_5p

mirBase accession

MIMAT0000087

Sequence

0- UGUAAACAUCCUCGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000087
TargetScanVert: hsa-miR-30a-5p
TargetMiner: hsa-miR-30a-5p
miRDB: MIMAT0000087

Star sequence

Hsa-Mir-30-P1b_3p*

mirBase accession

MIMAT0000088

Sequence

41- CUUUCAGUCGGAUGUUUGCAGC -63

Get sequence

Proposed targets

microrna.org: MIMAT0000088
TargetScanVert: hsa-miR-30a-3p
TargetMiner: hsa-miR-30a-3p
miRDB: MIMAT0000088