MirGeneDB 2.1

MirGeneDB ID

Hsa-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Human (Homo sapiens)
MiRBase ID hsa-mir-30d
Paralogues Hsa-Mir-30-P1b  Hsa-Mir-30-P1d  Hsa-Mir-30-P2a  Hsa-Mir-30-P2b  Hsa-Mir-30-P2d 
Orthologues Aca-Mir-30-P1a  Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(hg38)
chr8: 134804879-134804940 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)
Mir-30-P2a chr8: 134800532-134800591 [-] UCSC Ensembl
Mir-30-P1a chr8: 134804879-134804940 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUAAAUUUCUUGUUCAGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAUUCACAGACAUCCUCUUGAUA
Get precursor sequence
Structure
        10         20         30        40        50        60 
CUUAAAUUUCUUGUUCA-   -|   U  U  U         CCC           GUAAGA 
                  GAA AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AUAGUUCUCCUACAGACA   A^   C  U  U         A--           AUCGAC 
120       110       100        90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ad Ar Bl Bo Bo Bo Bo Bo Br Br Br Br Br Br Br Br Br Br Br Es Ga He He He He He Ki Li Lu Ly Mu Ne Pa Pl Pl Sk Sp Sp St Su Te Th To Tr Ve
Mature sequence

Hsa-Mir-30-P1a_5p

mirBase accessionMIMAT0000245
Sequence
0- UGUAAACAUCCCCGACUGGAAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000245
TargetScanVert: hsa-miR-30d-5p
TargetMiner: hsa-miR-30d-5p
miRDB: MIMAT0000245
Star sequence

Hsa-Mir-30-P1a_3p*

mirBase accessionMIMAT0004551
Sequence
40- CUUUCAGUCAGAUGUUUGCUGC -62
Get sequence
Proposed targets microrna.org: MIMAT0004551
TargetScanVert: hsa-miR-30d-3p
TargetMiner: hsa-miR-30d-3p
miRDB: MIMAT0004551