Mir-30-P1a

MirGeneDB ID

Hsa-Mir-30-P1a

Family name

MIR-30 (all species)

Species

Human (Homo sapiens)

MiRBase ID

hsa-mir-30d

Paralogues

Hsa-Mir-30-P1b Hsa-Mir-30-P1d Hsa-Mir-30-P2a Hsa-Mir-30-P2b Hsa-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cfa-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(hg38)

chr8: 134804879-134804940 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a chr8: 134800532-134800591 [-] UCSC Ensembl
Mir-30-P1a chr8: 134804879-134804940 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CUUAAAUUUCUUGUUCAGAAAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAGACACAGCUAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUAUUCACAGACAUCCUCUUGAUA

Get precursor sequence

Structure

        10         20         30        40        50        60 
CUUAAAUUUCUUGUUCA-   -|   U  U  U         CCC           GUAAGA 
                  GAA AGUC GU GU GUAAACAUC   GACUGGAAGCU      C
                  CUU UCGG CA CG CGUUUGUAG   CUGACUUUCGA      A
AUAGUUCUCCUACAGACA   A^   C  U  U         A--           AUCGAC 
120       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dc	Dc	Dr	Dr	Xp	Xp	Bl	Br	Br	Ce	Ce	Co	Fo	He	Ki	Le	Li	Li	Lu	Pa	Pl	Pl	Sk	Sk	Sk	Sm	Sp	Sp	St	Te	Th	Ut

Mature sequence

Hsa-Mir-30-P1a_5p

mirBase accession

MIMAT0000245

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Proposed targets

microrna.org: MIMAT0000245
TargetScanVert: hsa-miR-30d-5p
TargetMiner: hsa-miR-30d-5p
miRDB: MIMAT0000245

Star sequence

Hsa-Mir-30-P1a_3p*

mirBase accession

MIMAT0004551

Sequence

40- CUUUCAGUCAGAUGUUUGCUGC -62

Get sequence

Proposed targets

microrna.org: MIMAT0004551
TargetScanVert: hsa-miR-30d-3p
TargetMiner: hsa-miR-30d-3p
miRDB: MIMAT0004551