MirGeneDB 2.1
MirGeneDB ID

Aca-Mir-30-P1a

Family name MIR-30 (all species)
Seed GUAAACA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-30d
Paralogues Aca-Mir-30-P1b  Aca-Mir-30-P1d  Aca-Mir-30-P2a  Aca-Mir-30-P2b  Aca-Mir-30-P2d 
Orthologues Ami-Mir-30-P1a  Bta-Mir-30-P1a  Cfa-Mir-30-P1a  Cli-Mir-30-P1a  Cmi-Mir-30-P1a  Cpi-Mir-30-P1a  Cpo-Mir-30-P1a  Dno-Mir-30-P1a  Dre-Mir-30-P1a  Ete-Mir-30-P1a  Gga-Mir-30-P1a  Gja-Mir-30-P1a  Gmo-Mir-30-P1a  Hsa-Mir-30-P1a  Lch-Mir-30-P1a  Loc-Mir-30-P1a  Mal-Mir-30-P1a  Mdo-Mir-30-P1a  Mml-Mir-30-P1a  Mmu-Mir-30-P1a  Mun-Mir-30-P1a  Oan-Mir-30-P1a  Ocu-Mir-30-P1a  Pbv-Mir-30-P1a  Rno-Mir-30-P1a  Sha-Mir-30-P1a  Spt-Mir-30-P1a  Sto-Mir-30-P1a  Tgu-Mir-30-P1a  Tni-Mir-30-P1a  Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xtr-Mir-30-P1a 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)		 4: 1751122-1751178 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P1a)		 Mir-30-P2a 4: 1747987-1748046 [-] UCSC Ensembl
Mir-30-P1a 4: 1751122-1751178 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUUUCCCAGAUGCACAGUAGUCUGUUGUUGUAAACAUCCCCGACUGGAAGCUGUAAAUUUCAGCUUUCAGUCAGAUGUUUGCUGCCACCGGCUAUUCAUAAACAACGCUGGAAGA
Get precursor sequence
Structure
        10          20        30        40        50         
UUCUUUCCCAGAUGCAC--|      U  U  U         CCC           GUAA 
                   AGUAGUC GU GU GUAAACAUC   GACUGGAAGCU    \
                   UUAUCGG CA CG CGUUUGUAG   CUGACUUUCGA    A
AGAAGGUCGCAACAAAUAC^      C  C  U         A--           CUUU 
     110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sk To Wh
Mature sequence

Aca-Mir-30-P1a_5p
mirBase accessionMIMAT0021926
Sequence 
0- UGUAAACAUCCCCGACUGGAAGCU -24
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Star sequence

Aca-Mir-30-P1a_3p*
mirBase accessionMIMAT0021927
Sequence 
35- CUUUCAGUCAGAUGUUUGCUGC -57
Get sequence