Mir-30-P1a

MirGeneDB ID

Cfa-Mir-30-P1a

Family name

MIR-30 (all species)

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-30d

Paralogues

Cfa-Mir-30-P1b Cfa-Mir-30-P1d Cfa-Mir-30-P2a Cfa-Mir-30-P2b Cfa-Mir-30-P2d

Orthologues

Aca-Mir-30-P1a Ami-Mir-30-P1a Bta-Mir-30-P1a Cja-Mir-30-P1a Cli-Mir-30-P1a Cmi-Mir-30-P1a Cpi-Mir-30-P1a Cpo-Mir-30-P1a Dno-Mir-30-P1a Dre-Mir-30-P1a Eca-Mir-30-P1a Ete-Mir-30-P1a Gga-Mir-30-P1a Gja-Mir-30-P1a Gmo-Mir-30-P1a Hsa-Mir-30-P1a Laf-Mir-30-P1a Lch-Mir-30-P1a Loc-Mir-30-P1a Mal-Mir-30-P1a Mdo-Mir-30-P1a Mml-Mir-30-P1a Mmr-Mir-30-P1a Mmu-Mir-30-P1a Mun-Mir-30-P1a Neu-Mir-30-P1a Oan-Mir-30-P1a Ocu-Mir-30-P1a Pab-Mir-30-P1a Pbv-Mir-30-P1a Rno-Mir-30-P1a Sha-Mir-30-P1a Spt-Mir-30-P1a Sto-Mir-30-P1a Tgu-Mir-30-P1a Tni-Mir-30-P1a Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xtr-Mir-30-P1a

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr13: 30910306-30910365 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1a)

Mir-30-P2a chr13: 30906038-30906097 [-] UCSC Ensembl
Mir-30-P1a chr13: 30910306-30910365 [-] UCSC Ensembl

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

UGCUCACAUGUGGUUGAGAAAGCCUGUGGUUGUAAACAUCCCCGACUGGAAGCUGGAAGACAGCAAAGCUUUCAGUCAGAUGUUUGCUGCUACCGGCUGUUCACAGACGGCACUUGGUCU

Get precursor sequence

Structure

        10         20         30        40        50        60
UGCUCACAUGUGGUUGA-   -|   U     U         CCC           GGAAG 
                  GAA AGCC GUGGU GUAAACAUC   GACUGGAAGCU     A
                  CUU UCGG CAUCG CGUUUGUAG   CUGACUUUCGA     C
UCUGGUUCACGGCAGACA   G^   C     U         A--           AACGA 
.       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

An	An	An	Bl	Ce	Co	He	Hi	Hi	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-30-P1a_5p

mirBase accession

MIMAT0006616

Sequence

0- UGUAAACAUCCCCGACUGGAAGCU -24

Get sequence

Proposed targets

TargetScanVert: cfa-miR-30d
miRDB: MIMAT0006616

Star sequence

Cfa-Mir-30-P1a_3p*

mirBase accession

None

Sequence

38- CUUUCAGUCAGAUGUUUGCUGC -60

Get sequence