Mir-30-P1d

MirGeneDB ID

Cfa-Mir-30-P1d

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

Dog (Canis familiaris)

MiRBase ID

cfa-mir-30e

Paralogues

Cfa-Mir-30-P1a Cfa-Mir-30-P1b Cfa-Mir-30-P2a Cfa-Mir-30-P2b Cfa-Mir-30-P2d

Orthologues

Aca-Mir-30-P1d Ami-Mir-30-P1d Bta-Mir-30-P1d Cli-Mir-30-P1d Cmi-Mir-30-P1d3 Cmi-Mir-30-P1d4 Cpi-Mir-30-P1d Cpo-Mir-30-P1d Dno-Mir-30-P1d Dre-Mir-30-P1d Ete-Mir-30-P1d Gga-Mir-30-P1d Gja-Mir-30-P1d Gmo-Mir-30-P1d Hsa-Mir-30-P1d Lch-Mir-30-P1d Loc-Mir-30-P1d Mal-Mir-30-P1d Mdo-Mir-30-P1d Mml-Mir-30-P1d Mmu-Mir-30-P1d Mun-Mir-30-P1d Oan-Mir-30-P1d Ocu-Mir-30-P1d Pbv-Mir-30-P1d Rno-Mir-30-P1d Sha-Mir-30-P1d Spt-Mir-30-P1d Sto-Mir-30-P1d3 Sto-Mir-30-P1d4 Tgu-Mir-30-P1d Tni-Mir-30-P1d Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xtr-Mir-30-P1d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(canFam3_add)

chr15: 2283306-2283369 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-30-P1d)

Mir-30-P2d chr15: 2280050-2280110 [-] UCSC Ensembl
Mir-30-P1d chr15: 2283306-2283369 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCUCCGUCCUUUCUGGGCAGUCUUUGCUACUGUAAACAUCCUUGACUGGAAGCUGUAAGGUGCUCAGAGGGGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACGGUCACGGUCGUCCCCA

Get precursor sequence

Structure

        10            20        30        40        50        60  
GCUCCGUCCUUUCUGGG----|     UU  UA            UU           GUAAGGU 
                     CAGUCU  GC  CUGUAAACAUCC  GACUGGAAGCU       G
                     GUCGGA  CG  GACAUUUGUAGG  CUGACUUUCGG       C
ACCCCUGCUGGCACUGGCACC^     --  GC            --           GGAGACU 
  120       110       100          90          80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bl	Ce	Co	He	Hy	Ki	Ki	Li	Lu	Ov	Sk	Te	Te

Mature sequence

Cfa-Mir-30-P1d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUUGACUGGAAGCU -24

Get sequence

Star sequence

Cfa-Mir-30-P1d_3p*

mirBase accession

MIMAT0006627

Sequence

42- CUUUCAGUCGGAUGUUUACAGC -64

Get sequence

Proposed targets

TargetScanVert: cfa-miR-30e
miRDB: MIMAT0006627