MirGeneDB 2.1

MirGeneDB ID

Pbv-Mir-30-P1d

Family name MIR-30 (all species)
Seed GUAAACA
Species Burmese python (Python bivittatus)
MiRBase ID pbv-mir-30e
Paralogues Pbv-Mir-30-P1a  Pbv-Mir-30-P1b  Pbv-Mir-30-P2a  Pbv-Mir-30-P2b  Pbv-Mir-30-P2d 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cmi-Mir-30-P1d3  Cmi-Mir-30-P1d4  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Sto-Mir-30-P1d3  Sto-Mir-30-P1d4  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xla-Mir-30-P1d1  Xla-Mir-30-P1d2  Xtr-Mir-30-P1d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000186305.2_Python_molurus_bivittatus)
KE952992.1: 282996-283058 [+]
Clustered miRNAs
(< 50kb from Mir-30-P1d)
Mir-30-P1d KE952992.1: 282996-283058 [+]
Mir-30-P2d KE952992.1: 287017-287077 [+]
Precursor
(pre-Mir +30nt flank)
UUGUGAAUUUAUCUGGGCAGUUGUUGCUCCUGUAAACAUCCUUGACUGGAAGCUGUACAGGCUCAAAGAGGCUUUCAGUCGGAUGUUUACAGCGGCAGGCUGCCACAAUUCUCCUGAAACAGA
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Structure
        10            20        30        40        50        60  
UUGUGAAUUUAUCUGGG----|   UG     C            UU           GUACAGG 
                     CAGU  UUGCU CUGUAAACAUCC  GACUGGAAGCU       \
                     GUCG  GACGG GACAUUUGUAGG  CUGACUUUCGG       C
AGACAAAGUCCUCUUAACACC^   --     C            --           AGAAACU 
 120       110       100          90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Pbv-Mir-30-P1d_5p

mirBase accessionMIMAT0038878
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
Get sequence
Star sequence

Pbv-Mir-30-P1d_3p*

mirBase accessionMIMAT0038879
Sequence
41- CUUUCAGUCGGAUGUUUACAGC -63
Get sequence