MirGeneDB 2.1

MirGeneDB ID

Xla-Mir-30-P1d2

Family name MIR-30 (all species)
Seed UUUCAGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-30-P1a1  Xla-Mir-30-P1a2  Xla-Mir-30-P1b1  Xla-Mir-30-P1b2  Xla-Mir-30-P1d1  Xla-Mir-30-P2a1  Xla-Mir-30-P2a2  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2 
Orthologues Aca-Mir-30-P1d  Ami-Mir-30-P1d  Bta-Mir-30-P1d  Cfa-Mir-30-P1d  Cli-Mir-30-P1d  Cpi-Mir-30-P1d  Cpo-Mir-30-P1d  Dno-Mir-30-P1d  Dre-Mir-30-P1d  Ete-Mir-30-P1d  Gga-Mir-30-P1d  Gja-Mir-30-P1d  Gmo-Mir-30-P1d  Hsa-Mir-30-P1d  Lch-Mir-30-P1d  Loc-Mir-30-P1d  Mal-Mir-30-P1d  Mdo-Mir-30-P1d  Mml-Mir-30-P1d  Mmu-Mir-30-P1d  Mun-Mir-30-P1d  Oan-Mir-30-P1d  Ocu-Mir-30-P1d  Pbv-Mir-30-P1d  Rno-Mir-30-P1d  Sha-Mir-30-P1d  Spt-Mir-30-P1d  Tgu-Mir-30-P1d  Tni-Mir-30-P1d  Xtr-Mir-30-P1d 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030727.1: 72107120-72107183 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUGGUGUUAGAUGGGCAGUUACAGCCUCUGUAAACAUCCUUGACUGGAAGCUGUGUAAUAAUGUAAGUAGCUUUCAGUCGGAUAUUUACAGCUGCUGGCUGCUACAGUCCUCCUUUUACAAG
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Structure
        10            20        30        40        50        60  
GAAUGGUGUUAGAUGGG----|   UA    CU       C    UU           GUGUAAU 
                     CAGU  CAGC  CUGUAAA AUCC  GACUGGAAGCU       A
                     GUCG  GUCG  GACAUUU UAGG  CUGACUUUCGA       A
GAACAUUUUCCUCCUGACAUC^   --    UC       A    --           UGAAUGU 
  120       110       100          90          80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Eg He Re St St St St
Star sequence

Xla-Mir-30-P1d2_5p*

mirBase accessionNone
Sequence
0- UGUAAACAUCCUUGACUGGAAGCU -24
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Mature sequence

Xla-Mir-30-P1d2_3p

mirBase accessionNone
Sequence
42- CUUUCAGUCGGAUAUUUACAGC -64
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