Mir-30-P2d2

MirGeneDB ID

Xla-Mir-30-P2d2

Family name

MIR-30 (all species)

Seed

GUAAACA

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-30c

Paralogues

Xla-Mir-30-P1a1 Xla-Mir-30-P1a2 Xla-Mir-30-P1b1 Xla-Mir-30-P1b2 Xla-Mir-30-P1d1 Xla-Mir-30-P1d2 Xla-Mir-30-P2a1 Xla-Mir-30-P2a2 Xla-Mir-30-P2b1 Xla-Mir-30-P2b2 Xla-Mir-30-P2d1

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Ete-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xtr-Mir-30-P2d

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030727.1: 72108697-72108757 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UUCUUUAUAAUUGAACCAUGCUGCAGUGAUUGUAAACAUCCUACACUCUCAGCUGUGAACAUAAGGUGGCUGGGAGAAGGGUGUUUACCCCCCCUGCCAUGGAGAGUCCUCAUGUGUUGUC

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Structure

        10            20        30        40        50        60 
UUCUUUAUAAUUGAACC----|  CU    UGAUU           ACA         GUGAAC 
                     AUG  GCAG     GUAAACAUCCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGUGGGA   GAGGGUCGG      A
CUGUUGUGUACUCCUGAGAGG^  --    CCCCC           A--         UGGAAU 
 .       110       100          90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Eg	He	Re	St	St	St	St

Mature sequence

Xla-Mir-30-P2d2_5p

mirBase accession

MIMAT0046572

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

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Star sequence

Xla-Mir-30-P2d2_3p*

mirBase accession

MIMAT0046573

Sequence

39- CUGGGAGAAGGGUGUUUACCCC -61

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