MirGeneDB 2.1

MirGeneDB ID

Oan-Mir-30-P2d

Family name MIR-30 (all species)
Seed GUAAACA
Species Platypus (Ornithorhynchus anatinus)
MiRBase ID oan-mir-30c-1
Paralogues Oan-Mir-30-P1a  Oan-Mir-30-P1b  Oan-Mir-30-P1d  Oan-Mir-30-P2a  Oan-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Ocu-Mir-30-P2d  Pbv-Mir-30-P2d  Rno-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(mOrnAna1.p.v1_plustraces)
NC_041743.1: 40947632-40947692 [+]
Clustered miRNAs
(< 50kb from Mir-30-P2d)
Mir-30-P1d NC_041743.1: 40945688-40945750 [+]
Mir-30-P2d NC_041743.1: 40947632-40947692 [+]
Precursor
(pre-Mir +30nt flank)
UGCUCCAUUGGGAUCCCGUGCUGUGGGGGGUGUAAACAUCCUACACUCUCAGCUGUCAAGUCAAGGAGGCUGGGAGAGGGUUGUUUACUCCCUCCGCCAUGGAGAACUUCAGCCAAGUCCA
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Structure
        10            20        30        40        50        60 
UGCUCCAUUGGGAUCCC----|  CU        U       U   ACA         GUCAAG 
                     GUG  GUGGGGGG GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGCCUCCC CAUUUGU GGG   GAGGGUCGG      U
ACCUGAACCGACUUCAAGAGG^  --        U       U   A--         AGGAAC 
 .       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Ce He Ki Te
Mature sequence

Oan-Mir-30-P2d_5p

mirBase accessionMIMAT0006911
Sequence
0- UGUAAACAUCCUACACUCUCAGCU -24
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Star sequence

Oan-Mir-30-P2d_3p*

mirBase accessionMIMAT0031028
Sequence
39- CUGGGAGAGGGUUGUUUACUCC -61
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