Mir-30-P2d

MirGeneDB ID

Ete-Mir-30-P2d

Family name

MIR-30 (all species)

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-30-P1a Ete-Mir-30-P1b Ete-Mir-30-P1d Ete-Mir-30-P2a Ete-Mir-30-P2b

Orthologues

Aca-Mir-30-P2d Ami-Mir-30-P2d Bta-Mir-30-P2d Cfa-Mir-30-P2d Cja-Mir-30-P2d Cli-Mir-30-P2d Cmi-Mir-30-P2d Cpi-Mir-30-P2d Cpo-Mir-30-P2d Dno-Mir-30-P2d Dre-Mir-30-P2d Eca-Mir-30-P2d Gga-Mir-30-P2d Gja-Mir-30-P2d Gmo-Mir-30-P2d Hsa-Mir-30-P2d Laf-Mir-30-P2d Lch-Mir-30-P2d Loc-Mir-30-P2d Mal-Mir-30-P2d Mdo-Mir-30-P2d Mml-Mir-30-P2d Mmr-Mir-30-P2d Mmu-Mir-30-P2d Mun-Mir-30-P2d Neu-Mir-30-P2d Oan-Mir-30-P2d Ocu-Mir-30-P2d Pab-Mir-30-P2d Pbv-Mir-30-P2d Rno-Mir-30-P2d Sha-Mir-30-P2d Spt-Mir-30-P2d Sto-Mir-30-P2d Tgu-Mir-30-P2d Tni-Mir-30-P2d Xla-Mir-30-P2d1 Xla-Mir-30-P2d2 Xtr-Mir-30-P2d

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(echTel2)

JH980313: 2679335-2679395 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-30-P2d)

Mir-30-P2d JH980313: 2679335-2679395 [-] UCSC
Mir-30-P1d JH980313: 2682162-2682225 [-] UCSC

Seed

GUAAACA

Precursor
(pre-Mir +30nt flank)

CCCUCCCGGCCGUCACCAUGUUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGGUGUUUACUCCUGCUGCCGUGGAAAUCGUCUUCUGGAGAAG

Get precursor sequence

Structure

        10        20          30        40        50        60 
CCCUCCCGGCCGUCACCAUGUU--|     UGU           ACA         GUGAGC 
                        GUAGUG   GUAAACAUCCU   CUCUCAGCU      \
                        CGUCGU   CAUUUGUGGGG   GAGGGUCGG      U
GAAGAGGUCUUCUGCUAAAGGUGC^     CCU           A--         UGGAAC 
 .       110       100        90        80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Ete-Mir-30-P2d_5p

mirBase accession

None

Sequence

0- UGUAAACAUCCUACACUCUCAGCU -24

Get sequence

Star sequence

Ete-Mir-30-P2d_3p*

mirBase accession

None

Sequence

39- CUGGGAGAGGGGUGUUUACUCC -61

Get sequence