MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-30-P2d

Family name MIR-30 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-30c-1
Paralogues Rno-Mir-30-P1a  Rno-Mir-30-P1b  Rno-Mir-30-P1d  Rno-Mir-30-P2a  Rno-Mir-30-P2b 
Orthologues Aca-Mir-30-P2d  Ami-Mir-30-P2d  Bta-Mir-30-P2d  Cfa-Mir-30-P2d  Cja-Mir-30-P2d  Cli-Mir-30-P2d  Cmi-Mir-30-P2d  Cpi-Mir-30-P2d  Cpo-Mir-30-P2d  Dno-Mir-30-P2d  Dre-Mir-30-P2d  Eca-Mir-30-P2d  Ete-Mir-30-P2d  Gga-Mir-30-P2d  Gja-Mir-30-P2d  Gmo-Mir-30-P2d  Hsa-Mir-30-P2d  Laf-Mir-30-P2d  Lch-Mir-30-P2d  Loc-Mir-30-P2d  Mal-Mir-30-P2d  Mdo-Mir-30-P2d  Mml-Mir-30-P2d  Mmr-Mir-30-P2d  Mmu-Mir-30-P2d  Mun-Mir-30-P2d  Neu-Mir-30-P2d  Oan-Mir-30-P2d  Ocu-Mir-30-P2d  Pab-Mir-30-P2d  Pbv-Mir-30-P2d  Sha-Mir-30-P2d  Spt-Mir-30-P2d  Sto-Mir-30-P2d  Tgu-Mir-30-P2d  Tni-Mir-30-P2d  Xla-Mir-30-P2d1  Xla-Mir-30-P2d2  Xtr-Mir-30-P2d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr5: 139699889-139699949 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2d)		 Mir-30-P2d chr5: 139699889-139699949 [-] UCSC Ensembl
Mir-30-P1d chr5: 139702884-139702947 [-] UCSC Ensembl
Seed GUAAACA
Precursor
(pre-Mir +30nt flank)		 
GCCCCUUGGCUAUAACCAUGUUGUAGUGUGUGUAAACAUCCUACACUCUCAGCUGUGAGCUCAAGGUGGCUGGGAGAGGGUUGUUUACUCCUUCUGCCAUGGAAAACGUCAGCUUGAAGAA
Get precursor sequence
Structure
        10            20        30        40        50        60 
GCCCCUUGGCUAUAACC----|  UU    UGUGU       U   ACA         GUGAGC 
                     AUG  GUAG     GUAAACA CCU   CUCUCAGCU      \
                     UAC  CGUC     CAUUUGU GGG   GAGGGUCGG      U
AAGAAGUUCGACUGCAAAAGG^  --    UUCCU       U   A--         UGGAAC 
 .       110       100          90        80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Mature sequence

Rno-Mir-30-P2d_5p
mirBase accessionMIMAT0000804
Sequence 
0- UGUAAACAUCCUACACUCUCAGCU -24
Get sequence
Proposed targets microrna.org: MIMAT0000804
TargetScanVert: rno-miR-30c-5p
miRDB: MIMAT0000804
Star sequence

Rno-Mir-30-P2d_3p*
mirBase accessionMIMAT0004719
Sequence 
39- CUGGGAGAGGGUUGUUUACUCC -61
Get sequence
Proposed targets microrna.org: MIMAT0004719
TargetScanVert: rno-miR-30c-1-3p
miRDB: MIMAT0004719